Cytoscape

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data.

Free
Open Source
Mac OS X
Windows
Linux

cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. a lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:

load molecular and genetic interaction data sets in many formatsproject and integrate global datasets and functional annotationsestablish powerful visual mappings across these dataperform advanced analysis and modeling using cytoscape pluginsvisualize and analyze humancurated pathway datasets such as reactome or kegg.

Links to official Cytoscape sites

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The Best 12 Cytoscape Alternatives

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Cytoscape

Links to official Cytoscape sites

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The Best 12 Cytoscape Alternatives

Gephi

Linkurious

NodeXL

Wandora

Polinode

KeyLines

Touchgraph Navigator

Pathomx

Neoclipse

Prefuse

Socilyzer

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