Cytoscape

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data.

Free
Open Source
Mac OS X
Windows
Linux

cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. a lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:

load molecular and genetic interaction data sets in many formatsproject and integrate global datasets and functional annotationsestablish powerful visual mappings across these dataperform advanced analysis and modeling using cytoscape pluginsvisualize and analyze humancurated pathway datasets such as reactome or kegg.

Links to official Cytoscape sites

Features

The Best 12 Cytoscape Alternatives

39 Like

Gephi

Gephi is an open-source software for visualizing and analyzing large networks graphs. .

Free Open Source Mac OS X Windows Linux

Exploration Interactive Graph Exploration
7 Like

Linkurious

An on-premise graph visualization and analysis software to investigate complex connected data.

Commercial Web
6 Like

NodeXL

NodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs. With NodeXL, you can enter a network...

Free Open Source Windows Microsoft Office Excel
6 Like

Wandora

Wandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered...

Free Open Source Mac OS X Windows Linux
5 Like

Polinode

Polinode is a tool that makes it easy to perform powerful network analysis. You can either upload your own network data or use the integrated relationship-based survey...

Commercial Web
4 Like

KeyLines

KeyLines is a JavaScript toolkit for building high-performance network visualization applications quickly.

Commercial Mac OS X Windows Linux Android Web
1 Like

Neoclipse

Neoclipse is a standalone workbench application to interact with Neo4j (database directory or server). It supports Cypher, index searches, visualisation, graph updates.

Free Open Source Windows
1 Like

Touchgraph Navigator

TouchGraph is the producer of data visualization software TouchGraph Navigator 2. With TouchGraph Navigator 2, users can upload data and create "interactive network...

Commercial Windows Linux
1 Like

Pathomx

Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended...

Free Open Source Mac OS X Windows
0 Like

Prefuse

the prefuse visualization toolkit Prefuse is a set of software tools for creating rich interactive data visualizations. The original prefuse toolkit provides a...

Free Open Source Mac OS X Windows Linux
0 Like

Socilyzer

Web-based tool for conducting a social network analysis: from data collection to graph visualization and analysis.

Freemium Web

Search app for alternative

Alternativein is a new approach to finding good application.
Just type what software you want to change and browse great alternatives, based on our great community recommendations.

Alternativein is powered by a community that helps you make informed decisions. Tell us what you’re passionate about to get your personalized feed and help others.

Alternativein is a product recommendation community that helps connect people with the best products for them. You shouldn’t have to waste time and money to find solutions to your problems. By collecting the knowledge of enthusiasts across the world through recommendations, we can quickly and confidently show people the truth about a product.

We dream of a world where products succeed or fail on their own merits, and allowing people the space to share their thoughts is the first step in achieving that.

Cytoscape

Links to official Cytoscape sites

Features

Categories

Tags

The Best 12 Cytoscape Alternatives

Gephi

Linkurious

NodeXL

Wandora

Polinode

KeyLines

Neoclipse

Touchgraph Navigator

Pathomx

Prefuse

Socilyzer

Search app for alternative

Menu